command

robertsmac:bsmap-2.42 sr320$ ./bsmap -a /Volumes/Bay3/Software/bismark_v0.6.4/filtered_Unlabeled_NoIndex_L003_R1_trimmed.fastq -d  /Volumes/Bay3\ scratch/Combined_fosmids_cd_hit_mod_20000.fa -o /Volumes/Bay3\ scratch/BSMAP_output_trimmed_v0_1_0.sam -p 1

running on greenbird

complete (~2 hours)

FILES

http://robertsmac.fish.washington.edu/~sr320/filefish/BSMAP_output_trimmed_v0_1_0.sam   (~12GB)

http://robertsmac.fish.washington.edu/~sr320/filefish/Combined_fosmids_cd_hit_mod_20000.fa (~6MB)

FILES

http://aquacul4.fish.washington.edu/~steven/filefish/BSMAP_output_trimmed_v0_1_0.sam   (~12GB)

http://aquacul4.fish.washington.edu/~steven/filefish/Combined_fosmids_cd_hit_mod_20000.fa (~6MB)